Homeodomain motifs (all organisms, from Homeodomain Resource)

• 1-oct
• 2-oct
• 3-oct
• alx4
• arix
• athb6
• barx2
• cbx2
• cdx1
• cdx2
• cdx4
• crt1
• crx
• csx
• dlx2
• dlx3
• dlx4
• dlx5
• dlx6
• emx2
• evx1
• hesx1
• hk31
• hlx1
• hme1
• hnf1
• hnf4
• hnf6
• hox11
• hoxc13
• ipf1
• isl-1
• isl-2
• kn1
• lh2
• lhx3
• mei1
• mox2
• msx-1
• msx-2
• N-oct5
• nk61
• nkx2
• otx2
• pax2
• pax3
• pax4
• pax5
• pax6
• pax7
• pbx1
• pbx2
• pbx3
• pitx1
• pitx2
• pmx1
• pnx1
• pou1f1
• pou2f1
• pou3f1
• pou3f2
• pou3f4
• pou4f
• pou5f1
• six
• tcf-1
• tgif
• ttf-1

>1-oct
1 1 1 0 0 0 1 1 1 0 1 0 0
0 0 0 0 0 1 0 0 0 0 0 1 1
0 0 0 0 1 0 0 0 0 0 0 0 0
0 0 0 1 0 0 0 0 0 1 0 0 0

>2-oct
1 0 0 0 1 1 1 0
0 0 0 1 0 0 0 0
0 0 1 0 0 0 0 0
0 1 0 0 0 0 0 1

>3-oct
1 0 0 0 1 1 1 0
0 0 0 1 0 0 0 0
0 0 1 0 0 0 0 0
0 1 0 0 0 0 0 1

>alx4
0 1 1 0 0 0 0.5 1 0 0 1
0 0 0 0 0.5 0 0 0 0 0 0
0 0 0 0 0 1 0.5 0 0 0 0
1 0 0 1 0.5 0 0 0 1 1 0

>arix
0 0 0 1 1 0 0 1 0
0 0 1 0 0 0 0 0 0
1 0 0 0 0 0 0 0 1
0 1 0 0 0 1 1 0 0

>athb6
0 1 1 0 0 1 0 0 1
1 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0
0 0 0 1 1 0 1 1 0

>barx2
0 0 0 1 1 0 0 0.5 0 0 0 0 0
0.5 0.5 0 0 0 0 0 0 0 0 0 0 0.5
0 0 0 0 0 0 1 0.5 0 0 0 0 0
0.5 0.5 1 0 0 1 0 0 1 1 1 1 0.5

>cbx2
0 0 1 0 0 0 1 0 0 1 1 0 0
0 1 0 1 0 1 0 0 0 0 0 1 1
0 0 0 0 0 0 0 0 0 0 0 0 0
1 0 0 0 1 0 0 1 1 0 0 0 0

>cdx1
0 0 0 0 1 0 0
1 0 0 0 0 0 0
0 0 0 0 0 0 1
0 1 1 1 0 1 0

>cdx2
0.5 0 0 0 1 0 0.5
0.5 0 0 0 0 0 0
0 0 0 0 0 0 0.5
0 1 1 1 0 1 0

>cdx4
0 0 0 1 0 0.5
0 0 0 0 0 0
0 0 0 0 0 0
1 1 1 0 1 0.5

>crt1
0 1 1 0 0.25 0.25 0.25 1 0 0 1
0 0 0 0 0.25 0.25 0.25 0 0 0 0
0 0 0 0 0.25 0.25 0.25 0 0 0 0
1 0 0 1 0.25 0.25 0.25 0 1 1 0

>crx
0 1 1 0 0 0.5
0 0 0 0 1 0.5
0 0 0 0 0 0
1 0 0 1 0 0

>csx
0 0.25 1 1 0 0 0
0 0.25 0 0 0 0 0
0 0.25 0 0 1 0 1
1 0.25 0 0 0 1 0

>dlx2
0 1 0 0 1 1 0 0 0 1 0
1 0 1 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 1 0 1
0 0 0 1 0 0 1 1 0 0 0

>dlx3
0 1 0.25 0 0 1 0 0 0 0 1 0
1 0 0.25 0 0 0 0 1 0 1 0 0
0 0 0.25 0 0 0 0 0 0 0 0 1
0 0 0.25 1 1 0 1 0 1 0 0 0

>dlx4
0 0 1 1 0 0 1 1 0 0 0 1
0 1 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 1 0
1 0 0 0 1 1 0 0 1 1 0 0

>dlx5
1 0 1 1 0 0 1 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 1
0 1 0 0 1 1 0 0

>dlx6
1 0 1 1 0 0 1 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 1
0 1 0 0 1 1 0 0

>emx2
0 1 0 0 1 1 0 0 0 1 0
1 0 1 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 1 0 1
0 0 0 1 0 0 1 1 0 0 0

>evx1
0 0.25 1 0 0 1 0.25 0.25 0.25 0.25 0.25 0 1 1 0 0.25 0
0 0.25 0 0 0 0 0.25 0.25 0.25 0.25 0.25 0 0 0 0 0.25 0
0 0.25 0 0 0 0 0.25 0.25 0.25 0.25 0.25 0 0 0 0 0.25 1
1 0.25 0 1 1 0 0.25 0.25 0.25 0.25 0.25 1 0 0 1 0.25 0

>hesx1
0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0
0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0
0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 1 0 0 1

>hk31
0 1 1 0 0 1
0 0 0 0 0 0
0 0 0 1 0 0
1 0 0 0 1 0

>hlx1
0 0 1 1 0 0 1 1 0 0 0 1
0 1 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 1 0
1 0 0 0 1 1 0 0 1 1 0 0

>hme1
0 0 0 0 0 1 1 0 0 1 0 1
0 1 0 0 0 0 0 0 0 0 1 0
0 0 1 1 0 0 0 0 0 0 0 0
1 0 0 0 1 0 0 1 1 0 0 0

>hnf1
1 0 0 0 1 1 0 1 0 0 0 0 1 0 1
0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
0 1 0 0 0 0 0 0 0 0 0 1 0 0 0
0 0 1 1 0 0 1 0 1 1 1 0 0 0 0

>hnf4
0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0
1 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 1 0
0 1 0 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 0
0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1

>hnf6
0 1 0 1 0 0 0 1 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0
1 0 0 0 0 0 1 0 0 0 0 0 0
0 0 1 0 1 1 0 0 1 1 1 1 1

>hox11
0 0 0 1 0 0 0 1 1
0 0 1 0 0 0 1 0 0
0 0 0 0 0 0 0 0 0
1 1 0 0 1 1 0 0 0

>hoxc13
0 0 0.5 1 0 0.25 0.5 0.5
0 0 0 0 0 0.25 0 0
0 0 0 0 0 0.25 0.5 0.5
1 1 0.5 0 1 0.25 0 0

>ipf1
0 0 0 0 1 1 0 0 0 0
1 1 0.5 0 0 0 0 0 0 0
0 0 0 0 0 0 0 1 1 1
0 0 0.5 1 0 0 1 0 0 0

>isl-1
0 0 0 0 1 1 0 1 0 0 0 0
0 1 0 0 0 0 0 0 0 1 0 0
1 0 1 0 0 0 0 0 0 0 0 1
0 0 0 1 0 0 1 0 1 0 1 0

>isl-2
0 0 1 1 0 0 0.5
0.5 0 0 0 0 0 0
0 0 0 0 0.5 0.5 0.5
0.5 1 0 0 0.5 0.5 0

>kn1
0 0 1 0 1 0 0 0
0 0 0 1 0 0 0.5 0
0 1 0 0 0 1 0.5 0
1 0 0 0 0 0 0 1

>lh2
0 0 1 1 0 0 1
1 0 0 0 0 0 0
0 0 0 0 0 0 0
0 1 0 0 1 1 0

>lhx3
0 1 1 0 0 1 1 0 0 1 1
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
1 0 0 1 1 0 0 1 1 0 0

>mei1
0 0 1 0 1 0 0 0
0 0 0 1 0 0 0.5 0
0 1 0 0 0 1 0.5 0
1 0 0 0 0 0 0 1

>mox2
0 0 1 1 0 0 1 1 0 0 0 1
0 1 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 1 0
1 0 0 0 1 1 0 0 1 1 0 0

>msx-1
0 0 1 1 0 0 0
1 0 0 0 0 0 0
0 0 0 0 0 0 1
0 1 0 0 1 1 0

>msx-2
0 0 1 1 0 0 1 1 0 0 0 1
0 1 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 1 0
1 0 0 0 1 1 0 0 1 1 0 0

>N-oct5
1 0 0 0 1 1 1 0
0 0 0 1 0 0 0 0
0 0 1 0 0 0 0 0
0 1 0 0 0 0 0 1

>nk61
0 0 1 1 0 0 1 0
0 0 0 0 0 0 0 1
0 0 0 0 0 0 0 0
1 1 0 0 1 1 0 0

>nkx2
0 0 1 1 0 0 0.5 0 0 0
0 0.5 0 0 0 0 0 0.5 0 0
0 0 0 0 1 0 0.5 0.5 0 0
1 0.5 0 0 0 1 0 0 1 1

>otx2
0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0
1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1
0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0
0 0 1 0 0 1 0 0 1 0 0 0 1 1 0 1 0

>pax2
0 0 1 0 0 0 0.5 0 0 1 0
0 1 0 0.5 0 1 0 0 0 0 1
0 0 0 0 1 0 0.5 0 1 0 0
1 0 0 0.5 0 0 0 1 0 0 0

>pax3
0 1 1 0 0.25 0.25 1 0 0 1
0 0 0 0 0.25 0.25 0 0 0 0
0 0 0 0 0.25 0.25 0 0 0 0
1 0 0 1 0.25 0.25 0 1 1 0

>pax4
1 0.25 0.25 0.25 0 0 1 0 0 0
0 0.25 0.25 0.25 0.5 1 0 1 1 1
0 0.25 0.25 0.25 0 0 0 0 0 0
0 0.25 0.25 0.25 0.5 0 0 0 0 0

>pax5
1 0 0 0 1 0 0 0 0.5 0 0 1 0 0 0
0 0 0 1 0 1 0 1 0 0 0.5 0 0 0 0.5
0 1 0 0 0 0 1 0 0 0 0.5 0 0 1 0
0 0 1 0 0 0 0 0 0.5 1 0 0 1 0 0.5

>pax6
1 1 0.25 0.25 0 0 0 1 0 0 0 0.5 0 0 1 0 0 0.5 1 0
0 0 0.25 0.25 0 0 1 0 1 0 1 0 0 0.5 0 0 0 0.5 0 0.5
0 0 0.25 0.25 0 0 0 0 0 1 0 0 0 0.5 0 0 0.5 0 0 0
0 0 0.25 0.25 1 1 0 0 0 0 0 0.5 1 0 0 1 0.5 0 0 0.5

>pax7
1 0 0 1 1
0 0 0 0 0
0 0 0 0 0
0 1 1 0 0

>pbx1
0.725 0 0 1 0 0 0 1 0 0.125 0.575
0.025 0 0 0 0 0 0 0 0.1 0.125 0.125
0.125 0 1 0 0 0 0.4 0 0 0.425 0.275
0.125 1 0 0 1 1 0.6 0 0.9 0.325 0.025

>pbx2
0 0 0 1 0 0 0 1 0 0.125 0.125 0.125 0.125 0.125 0.125
0 0 0 0 0 0 0 0 0 0.125 0.125 0.625 0.125 0.125 0.125
0.5 0 1 0 0 0 0.5 0 0 0.125 0.625 0.125 0.125 0.125 0.125
0.5 1 0 0 1 1 0.5 0 1 0.625 0.125 0.125 0.625 0.625 0.625

>pbx3
0 0 0 1 0 0 0 1 0 0.125 0.375 0.125 0.125 0.125 0.125
0 0 0 0 0 0 0 0 0 0.125 0.125 0.625 0.125 0.125 0.125
0.5 0 1 0 0 0 0.5 0 0 0.125 0.375 0.125 0.125 0.125 0.125
0.5 1 0 0 1 1 0.5 0 1 0.625 0.125 0.125 0.625 0.625 0.625

>pitx1
0 1 1 0 0 0
0 0 0 0 1 1
0 0 0 0 0 0
1 0 0 1 0 0

>pitx2
0 1 1 0 0 0
0 0 0 0 1 1
0 0 0 0 0 0
1 0 0 1 0 0

>pmx1
0 1 1 0 1
0 0 0 0 0
0 0 0 0 0
1 0 0 1 0

>pnx1
0 0 1 0 1 0
0 0 0 1 0 0
0 1 0 0 0 1
1 0 0 0 0 0

>pou1f1
0 1 1 1 0
0 0 0 0 0
0 0 0 0 0
1 0 0 0 1

>pou2f1
1 0 0 0 1 1 1 0
0 0 0 1 0 0 0 0
0 0 1 0 0 0 0 0
0 1 0 0 0 0 0 1

>pou3f1
0 0 0 1 0 1 0.25 1 1 0 1 0 1 0
0 0 0 0 0 0 0.25 0 0 0 0 0 0 0
0 1 1 0 1 0 0.25 0 0 0 0 1 0 1
1 0 0 0 0 0 0.25 0 0 1 0 0 0 0

>pou3f2
1 0 0 0 1 1 1 0
0 0 0 1 0 0 0 0
0 0 1 0 0 0 0 0
0 1 0 0 0 0 0 1

>pou3f4
1 0 0 0 1 1 1 0
0 0 0 1 0 0 0 0
0 0 1 0 0 0 0 0
0 1 0 0 0 0 0 1

>pou4f
0.5 0 0 0 1 0 0 1 1 0
0 1 0 1 0 0 0 0 0 0.5
0.5 0 0 0 0 0 0 0 0 0
0 0 1 0 0 1 1 0 0 0.5

>pou5f1
1 0 0 0 1 1 1 0
0 0 0 1 0 0 0 0
0 0 1 0 0 0 0 0
0 1 0 0 0 0 0 1

>six
0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
0 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 1
0 0 1 0 1 0 0 1 1 0 1 0 0 0 1 1 0 0 1 0 0 0 0
1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 1 0 0

>tcf-1
1 1 0 1 1 1 0
0 0 1 0 0 0 0
0 0 0 0 0 0 1
0 0 0 0 0 0 0

>tgif
0 0 1 0 1 1
0 0 0 1 0 0
0 1 0 0 0 0
1 0 0 0 0 0

>ttf-1
0 0 1 1 0 0 0 0 0
0 1 0 0 0 0 0 0 0
0 0 0 0 1 0 1 0 0
1 0 0 0 0 1 0 1 1