ABS database (human, rat, mouse site alignments from ABS team)
>AML AACCACA AACCACA AACCACA AACCACA GACCGCA GACCGCA >AP1 TTAATCA TTAATCA TGACTCA TGACTCA TGCGTCA TGCGTCA GCAGTCA GCAGTCA >AP2 CCCCGCGC CCCGGCGC GCCGGAGG GCCGGAGG >AP2A CCCAGGG CCCAGGG GCCGGGG GCCGGGG >CAAT CCAAT CCAAT CCAAT CCAAT CCAAT CCAAT CCAAT CCAAT CCAAT CTAAT CCAAT CCATT CCATT >CEBP CAACCTnn CAACCTGT CAACCTnn TAACCTAC TAACCCAT TAACCAAT TAACCAAT nAACCAAT TAGCCAAT TAGCCAAT nAGCCAAT CAAACAAT CAAACAAT CAACCGCT CACCCATT GAGACAAT AATCCCAT CAACGCAT GAACGAAT >CETS GGGAAG AGGCAG AGGAAA AGGAAA >CJUN TGACATCA TGACATCA TTACCTCA TTACCTCA TTTCCTCA >CMYC CACGTG CACGTG CACGTG CACGTG CACGTG CACGTG >COUP TGAGCCCTTTGACCCAGTTTT TGAGACCTTTGGCCCAGTTTT >CREB TGACATCA TGACGTCA TGACGTCA TGACGTCA TGACGCAA TGACGCAA TGACGTAN TGACGNNN TGACGTTN TGACGNNN TGACGTCA TGACGTCA TGATGTCA TGATGTCA TGACATCA TTGCATCA TTGCATCA TGTCATTA TGACGCAT >CUTL AGAATCGAAATG AAAATCGAACCG >E2 CATGTG CATGTG >E2F TTTCGCGCC TTTCGCGCG >E2F1 GTCCCGC GTCCCGC TTCGCGC TTCGCGC TCCGCGC TTCGCGG NNCGCGG TTCGCGC TTCGCGC CTCCCGC CTCCCGC TTCCCGC TCCCCGC CTCGCGC TACGCGC TACGCGC >E47 CAGGTGCTTCC CAGGTGCTTCC CAAAGGCTTCC CAAATGCTGCC >EGR1 GCGGGGGAG GGCGGGGCA GAGGGGGTG GAGAGGGCG GGGCGGGCG GCGGGGGCG GCGGGGGCG GCGGGGGCG CTGGGGGCG CCGGGGGCG >ETS1 TGGGAAGT TAGGAAGT GAGGAAGN GAGGAAGN >FXR GGTGAATAACC GGTGAATAACC GGTTAATGACC GCTGAGTGAGC >GATA3 AGATGA AGATGA AGATGT AGATGT AGATAA AGATAG AGATAG AGATAG >GATA6 GAGATAA GAGATAA >GC GGGCGG GGGCGG GGGCGG GGGCGG GGGAGG GGGCAG >GR TGAAGTGGTCTTTGTCCTTGA TGAAGTGGTCTTTGTCCTTGA CAAAGAGCTCTGTGTCCTTGA >HIF1 CTTACACACGTACACACAC CCTTCACACGTACACACAC >HLTF AGTGGGTGGGGCTGGAACAT AGTGGGTGGGGCTGGAACAT >HMG1 AAGTGAAAGTGGGAA AACTGAAAGTGGGAA AAATGACATAGGAAA AAATGACAGAGGAAA >HNF1 AATCATTAAC AATAATTAAC AATGATTAAC AATAATTAAC AATGATTAAA AATGATTAAA AATAATTAAC AATTATTAAC AATAAGTAAC AATAAGTAAC AACCATTAAC AACCATTAAC AAACATTAAC GATTATTAAC GAGTCTTAAC GAGTCTTAAC TAGAATTACA TCTGATTAAC TGAGATTAAT AGAGATTAAT ACTCAATAAC GATCATTAAC ATGAAAGAAG ATGAAAGAAG AATGTTTAAC TGTGGTCAAT TGTGGTCAAT >HNF3 TTTGTATG TTTGTGTA TTTGTTTT TTTGTTTT ATTATTGA ATTATTGA >HNF3B TGTGTGC TGTGTGC TGATTGC TGTTTGT TGTTTGC TGTTTGC TCTTTGG TCTTTGG CGTTTGT CTTTTGT TTTTTGA TTTTTGA >HNF4 TTAACTTGG TTAACTTTG TGACCTTTG TGACCTTTG TGAACCTTG TGAACCTTG TGGACTTAG TGGACTTAG nAAGCCGTG CATGCTTCT >HNF6 GTAGAAGTCAATGAT ATAGAAGTCAATGAT AAAAAAATCAATAAT AAAAAAATCAATATC >HOX GTTATCAAA ATTATTAAA CTGATTAAG CTGATTAAG >HP1 GTTACTAGTTAAC GTTACTAGTTAAC nTTACTAGTTAAC >HSF1 GAAAACCCTGGAATATTC GAAACTGCTGGAAGATTC GAAGACTCTGGAGAGTTC GAAACCTCTGGAGAGTTC >HPF1 TCTAAT TCTAAT >IRF CTAAAGAGAAAAGAAACTGAAATTTTCA CTAAAGAGAAAGGAAAATGAAATTTTTA >M1 CCCAGCTGACCCAG CCCAGCTGACCCAG >MAZ GAGGGAGG nAGGGAGA >MEF2 GCTATTTT GCTATTTT nCTATATT nCTATATT nCTATATT nCTATATT nCTATATA nCTATATA CCTATATT nCTATATT GTTATTTT GTTATTTT GCTATTTT GCTATTTT nCTATTTT nCTATTTT nCTATTTT >MEF3 GAATGTCAGGGGCTTCAGG GAATGTCAGGGGCCTCAGG >MITF AAGACATGTGAT AAAACATGTGAT CAGTCATGTGCT TAGTCATGTGCT >MITF1 TGCACAn TGCACAn TGCACTC TGCACTC TGCACCC TGCACTC TGCGCTC TGCGCTC TGCGCCC TGCGCCC >MYB TCGTTA ACGTTA ACGTTC AAGTTC >MYF CAGTTGT CAGTTGT CAGCTGT CAGCTGT >MYOD CAGTTG CAGTTG CAGTTG CAGTTG CAGCTG CAGCTG CAGCTG CAGCTG CAGCTG CAGCTG CAGCTG CAGCTG CAACTG CAACTG CAGGTG CAGGTG CAGGTG CAAGTG CAAGTG CAAGTG CAAGTG >MZF2 AGATTTGGCGGGAGGGGGAGTGTCCA AGATTTGGCGGGAGGGGGAGTGTCCA >NF1 CTGGCAGGGA CTGGCAGGGA ATTGGCCGGA TTGGCCCGGG CTGGGCTGCG CTGGGCTGGG >NFAT TCTTTCCCCAG TCTTTCCCCAG nnTTTCCTCnn AATTTCCTATG AATTTCCTATG nnTTTCCTCnn ATTTTCCTATT ATTTTCCAATT AATTTCCAATG ATTTTCCAATG ATTTTCCCTCG ATTTTCCCTTG nnnTTCCAGGA nnnTTCCAGGA AAATTCCAnnn AAATTCCAGAG TTTTTCCTCCn ATTTTCCnnnn GGTTTCCAGTG TGTTTCCAATG ATTTTCCTGTG ATGTTCCTGTG TTTTTCCTATT ATTTTCCTATC >NFKB GGGATTTCACC GGGATTTCACC GGTAGTTCCCn GGTAGTTCCCn GGAGATTCCAC GGAGATTCCAC TGAAATTCCCC TAAAATTCCCC >NFY CCAATC CCAATC nCAATn nCAATn >NKX2 GTGACAGGA GTGACAGAA GTGGGAGGA GTGGGAGGA GTTCAAGGA GTTCAAGGA GTTCAAGGA >NRL ATCTCGCGGATGCTGAATC ATCTCCCGGATGCTGAATC ATCTCCCAGATGCTGATTC >OCT ATGAATAATTA ATGAATAAGTT >OLF1 TCCCCAAGGAA TCCCCAGGGAG >P53 ATACAAGGCC ATACAAGGCC GAGCAAGTCA GAGCCCAGCC >POU1F1 ATGAATAAGA ATGAATAAGA ATGAATAAAT ATGAATAAAT TTGATTAATT TTGATTAATT ATGAATATAA ATGAATATAT ATGGATAATT ATGGATAATT >POU2F1 ATGTAAAACA ATGTAAAACA >RAR CGGTGAACC CGGTGAACC TGTTGAACT TGTTGAACT >RFX1 CAGCGTGGTGACGTCGCAAC CAGCGCTGTGGCGTCATGAC >RXR TTGGGGTCATGAACTTGG TGGGGGTCATGAACTTGG >SMAD GTCTAGAC GTCTAGAC GTCTAGAC >SP1 TGGGTGGGG nGGGTGGGn nGGGTGGnn GGGGTGGCG nGGGAGGnn TGGGAGGAG TGGGAGGAG nGGGCGGnn nAGGCGGnn GGGGCGGGG GGGGCGGGG nGGGCGGnn GGGGCGGGG nGGGCGTGG GGGGCCGTG GGGGCCGTG GGGGCGGGA GTGGCGGGC GGGGCGGCG GGGGCGGCA nGGGCGGAA GGGGCGGGA GGGGCGGGA AGGGCGGGC nGGGCGGnn AGGGCGGGC TGGGCGGGC GGGGCGGnn GGGGCGGnn GGGGCGGnn GGGGCGGnn GGGGCGGnn nGGGCGGnn GGGGCGGnn nGGGCGGnn nGGGCGGnn nGGGCGGnn nGGGCGGnn nGGGCGGnn nGGGCGGnn nGGGCGGnn GAGGAGGGG GAGGAGGGG AAGGAGGAG GAGGAGGAG GGGGAGGCA GAGGAGGAG GAGGTGGGG AGGGAGGAG AGGGCGGGG AGGGCGGGG AGGGCGGGA AGGGCGGGT AGGGCGGGT nGGGCGGAG GGGGCTGGA nnGGCTGGG AGGGTGGGC TGGGCAGTC AGGGCTGGG GGGGTGGGT GGGGTTGGG AAGGTGGAG TGGGTGTGG GGGGCGTGG nGGGAGGGG nGGGAGGGG nnGGAGGGG nnGGAGGGG GGGGCGGGA TGGGAGGAG GTGGGGGGC GTGGGGGGC nGGGCGGGn GGGGCGGGG GGGGCGGAG CGGGCGGGG GGGGCGGGC GGGGCGGGC nGGGCGGnn nGGGCGGnn nGGGCGGGG GGGGCGGnn GGGGCGGnn GGGGACGGG AGGGCGGGA AAGGCGGGA AAGGCGGGT AGGGCGGGT nGGGCCGGG >SRF TCCTTCTTTGn TCCTTCTTTGn TCCTTCTTTGn nCCTTCTTTGG ACCTTATTTGG GCCTTATATGG nCCTTTTATGG nCCTTTTATGG nCCTTTTATGG nnCTATTATGG nnCTATTATGG nnCTATTATGG nCCTTACATGG nCCTTACATGG nCCTTATACGG nCCATATTTGG nCCATATTTGG nCCATATTTGG nCCATATTTGG AACTATCTTGG AACTATCTTGG nCCTAATATGG nCCTAATATGG TCCTTATATGG nCCTTATTTGG nCCTTATTTGG GnCATATATGG GCCATATATGG nCCATTCATGG nCCATTCATGG nCCGTATATGG nCCGTATATGG nCCGTATATGG TCCAAATTTAG TCCAAATTTAG >STAT3 TTTCCCCGAAA TTTCCCCGAAA >TBP nTATAAGn nTATAAGn TTATAAnn TTATAAnn TTATAAnn nTATAAnn nTATATTn nTATATTn ATATAAnn ATATAAnn nTATAAnn nTATAAnn nTATAAnn GTATAAAn CTATAAAn CTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAT nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAn nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATAAAA nTATTAAA nGATAAAn nAATAAAn nAATAAAn nnTTAAAT nnTTAAAT nnTTAAAT nnTTAAAT nnATAAAT nnATAAAT nAATAAAT nnATAAAT nnATAAAT nCATAAnn CCATAAAn nTACAAAT nTACAAAT GCACAAAT GCACAAAT nnnAAAAT CTTCAAAG nTTCAAAn nTTCATAA nTTTAAAA nTTTAAAA >TEF1 ACATTCCTTC ACATTACCTC ACATTCCTGC ACATTCTTCG ACATTCCTCC >USF TCACGTGT TCACGTGT nCACGTGn nCACGTGn CCACGTGA CCACGTGA CGATGTCA TGATGTCA TAGTGTCA >VDR CCCGGTGAACT CCGGGTGAACG CTGGGTGAATG CGAGGTGAGTG CGAGGTGAGCG CCCGCTGAACC